Software Tools
Several codes and web applications for solving problems in bioinformatics are available for non-commercial use.
Codes
- CAPITAL (Comparative Analysis of Pseudotime trajectory Inference with Tree ALignment) (Updated on 2023-03-22)
- Bivartect (BIt-based genomic VARiant deTECTion) (Updated on 2019-06-23)
- DotcodeR (DOT plot enCODEr for RNA structural similarity search in genomic sequences) (Released on 2017-11-16)
- IPknot (Integer Programming-based prediction of RNA pseudoKNOTs) (Updated on 2023-03-01)
- RactIP (RNA-RNA interACTion prediction using Integer Programming) (Updated on 2023-06-10)
- G4HMM (G-quadruplex motif search using Hidden Markov Models) (Updated on 2014-08-22)
- DAFS (Dual decomposition for Aligning and Folding RNA sequences Simultaneously) (Updated on 2022-02-11)
Web applications
- Rtips (RNA sTructure prediction using IP Scheme) (Updated on 2021-08-11)
- Rtools (Bioinformatics Web Server for RNA)
- EnuMol (ENUmerating MOLecular structures from path frequencies) (Updated on 2010-05-27)
